2. Yuri A. Kosinsky, Alexander S. Arseniev and Roman G. Efremov
Calculation
of pKa's of Ionizable Groups in Neurotoxin II as a Tool to Refine
2D NMR-Derived Spatial Structure.
5-th Electronic Conference on Computational Chemistry
3. A.P.Golovanov, R.G.Efremov, V.A.Jaravine, G.Vergoten, M.P.Kirpichnikov,
A.S.Arseniev.
Hydrophobic Organization of Proteins: Application
to Rational Protein Engineering of Barnase.
J. Biomolec. Struct. & Dynamics, 1998, v. 15, N 4, p. 1-15.
4. M.Ya.Reibarkh, D.E.Nolde, L.I.Vasilieva, E.V.Bocharov, A.A.Shulga,
M.P.Kirpichnikov, A.S.Arseniev.
Three-Dimensional Structure
of Binase in Solution.
FEBS Letters, 1998,v. 431, p. 250-254.
5. I.V. Maslennikov, A.G. Sobol, K.V. Gladky, A.A. Lugovskoy,
A.G. Ostrovsky, V.I. Tsetlin, V.T. Ivanov, A.S. Arseniev.
Two distinct NMR structures of alpha-conotoxin
G1 in aqueous solution.
Eur. J. Biochem., 1998, v. 254, N. 2, p. 238-247.
6. Yu.N. Utkin, A.V. Krivoshein, V.L. Davydov, I.L. Kasheverov, P.
Franke, I.V. Maslennikov, A.S. Arseniev, F. Hucho, V.I. Tsetlin.
Labeling of Torpedo californica nicotinic acetylcholine
receptor subunits by cobratoxin derivatives with photoactivatable groups
of different chemical nature at Lys23.
Eur. J. Biochem., 1998, v. 253, N. 1, 229-235.
7. Beloborodov U.S., Orekhov V.Yu., Arseniev A.S.
Effect of coupling between rotational and translational
brownian motions on NMR spin relaxation. Consideration using green function
of rigid body
J. Magn. Reson., 1998, v. 132, p. 328-329.
8. Lugovskoy A.A., Maslennikov I.V., Utkin Yu.N., Tsetlin V.I., Cohen
J.B., Arseniev A.S.
Spatial structure of M3 transmembrane segment
of nicotinic Acetylcholine Receptor alpha-subunit.
Eur. J.Biochem., 1998, v. 255, p. 455-461.
9. E.V. Bocharov, A.T. Gudkov, E.V.Budovskaya, A.S. Arseniev.
Conformational independence
of N- and C-domains in ribosomal protein L7/L12 and in the complex
with protein L10.
FEBS Lett., 1998, v. 423, p. 347-350.
10. Efremov R.G., Legret F., Capron A., Bahr G., Arseniev A.S.
Molecular modeling of HIV-1 coreceptor CCR5 and
exploring of conformational space of its extracellular domain in molecular
dynamics simulation.
J. Biomol. Struct. & Dyn., 1998, v. 16, p. 77-90.
2. I.V.Maslennikov, Z.O.Shenkarev, M.N. Zhmak, V.T. Ivanov, C.Methfessel,
V.I. Tsetlin, A.S. Arseniev.
NMR spatial structure of
a-conotoxin ImI reveals a common scaffold in snail and snake toxins recognizing
neuronal nicotinic acetylcholine receptors.
FEBS Letters, v. 444, pp. 275-280, 1999.
3. Efremov R.G., Nolde D.E., Vergoten G., Arseniev A.S.
A solvent model for simulations of peptides in
bilayers. I. Membrane-spanning alpha-helices.
Biophys. J., v. 76, pp. 2448-2459, 1999.
4. Efremov R.G., Nolde D.E., Vergoten G., Arseniev A.S.
A solvent model for simulations of peptides in
bilayers. II. Membrane-spanning alpha-helices.
Biophys. J., v. 76, pp. 2460-2471, 1999.
5. Efremov R.G., Vergoten G., Arseniev A.S.
A new "hydrophobic template" method detects segments
forming transmembrane alpha-helical bundles in ion channels.
Theor. Chem. Acc., v. 101, pp. 73-76, 1999.
6. Efremov R.G., Nolde D.E., Vergoten G., Arseniev A.S.
Peptides in membrane: assessment of environmental
effects via simulations using an implicit solvation model.
Theor. Chem. Acc., v. 101, pp. 170-174, 1999.
7. D.V. Dementieva, E.V. Bocharov, A.S. Arseniev.
Two forms of cytotoxin II from Naja naja oxiana
in aqueous solution. Spatial structures with tightly bound water molecules.
Eur. J. Biochem. v. 263, p. 152-162 (1999).
8. Efremov R.G., Truong M.-J., Darcissac E.C.A., Zeng J., Grau O.,
Vergoten G., Debard C., Capron A. Bahr G.M.
Human chemokine receptors CCR5, CCR3, and CCR2B
share common polarity motif in the first extracellular loop with other
human GPCRs: implications for HIV-1 coreceptor function.
Eur. J. Biochem. 1999. v. 263, N 3, p. 746-756.
9. V.S.Pashkov, I.V.Maslennikov, L.D.Tchikin, R.G.Efremov, V.T.Ivanov,
A.S. Arseniev.
Spatial structure of the
M2 transmembrane segment of the nicotinic acetylcholin receptor alfa-subunit.
FEBS Letters. 1999, v. 457, issue 1, p. 117-121.
10. V.N. Uversky, Z.Kh. Abdullaev, A.S. Arseniev, E.V. Bocharov,
D.A. Dolgikh, R.F. Latypov, T.N. Melnik, K.S. Vassilenko, M.P. Kirpichnikov.
Structure and stability
of the recombinant protein can depend on the expression method: S6 permutein
from direct and fusion expression systems.
Biochem. Biophys. Acta., 1999, v. 1432, 324-332.
11. Orekhov, V.Yu., Korzhnev D.M., Diercks T., Kessler H. & Arseniev
A.S.
1H-15N NMR dynamic study of an isolated alpha-helical
peptide (1-36)-bacteriorhodopsin reveals the equilibrium helix-coil transitions.
J. Biomol. NMR. 1999, v. 14, N 4, pp. 345-356.
12. Korzhnev D.M., Orekhov V.Yu. & Arseniev A.S.
The effect of helix-coil transition on backbone
15N NMR relaxation of isolated transmembrane segment (1-36)-bacterioopsin.
J. Biomol. NMR. 1999, v. 14, N 4, pp. 357-368.
13. Orekhov, V.Yu., Korzhnev, D.M., Pervushin, K.V., Hoffman, E.
& Arseniev, A.S.
Sampling of protein dynamics in nanosecond time
scale by 15N NMR relaxation and self-diffusion measurements.
J. Biomol. Struct. & Dynam., 1999, v.17, N 1, pp. 157-174.
14. Korzhnev D.M., Orekhov, V.Yu., Arseniev A.S., Gratias, R., Kessler
H.
Mechanism of the unfolding of transmembrane a-helical
segment (1-36)-bacteriorhodopsin studied by molecular dynamics simulations.
J. Phys. Chem., 1999, v. 103, pp. 7036-7043.
15. T.A. Gross, A. Arseniev, B.A. Cornell, J.H. Davis, J.A. Killian,
R.E. Koeppe II, L.K. Nicholson, F. Separovic, B.A. Wallace.
Gramicidin channel controversy - revisited.
Nature Struct. Biol., 1999, v.6, N 7, pp.610-611.
16. Volynsky P.E., Nolde D.E., Arseniev A.S., Efremov R.G..
Monte Carlo simulation of peptides in membrane
using heterogeneous implicit solvation model.
Internet J. Chemistry. 1999, v.2, article 4, URL: http://www.ijc.com/articles/1999v2/4/
17. Efremov R.G., Nolde D.E., Volynsky P.E., Chernyavsky A.A., Dubovskii
P.V., Arseniev A.S.
Factors important for fusogenic activity of peptides:
molecular modeling study of analogs of fusion peptide of influenza virus
hemagglutinin.
FEBS Letters, 1999, v. 462, pp. 205-210.